ComparativeGenomicsToolkit / hal
Hierarchical Alignment Format
☆168Updated 4 months ago
Alternatives and similar repositories for hal:
Users that are interested in hal are comparing it to the libraries listed below
- Jasmine: SV Merging Across Samples☆211Updated 4 months ago
- Python programs for processing GFF3 files☆97Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆145Updated 2 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ☆91Updated 3 weeks ago
- Constructing a pangenome gene graph☆186Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- accurate LiftOver tool for new genome assemblies☆124Updated 9 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆161Updated last year
- Tools for plotting methylation data in various ways☆147Updated 2 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆225Updated 8 months ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆180Updated last month
- ☆145Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆128Updated last week
- Fast and accurately polish the genome generated by long reads.☆222Updated 4 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆216Updated 10 months ago
- ☆186Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆217Updated 3 months ago
- Structural Variant Identification Method using Long Reads☆172Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- ☆206Updated 3 months ago
- Pangenome-based genome inference☆128Updated 3 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago