moshi4 / FastDTLmapperLinks
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆17Updated 3 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆14Updated last week
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- ☆16Updated last year
- Finding regions of similarity between plasmids☆17Updated 3 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated this week
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Automatic evaluation of HGTs☆30Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Updated 5 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- ☆15Updated 11 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆22Updated 11 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 2 weeks ago
- Gene tree - species tree reconciliation from gene tree distributions☆40Updated 2 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated 3 weeks ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Improved long-read assembly by preserving contained reads☆30Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated 2 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Updated last month
- Genome-Genome circle synteny☆25Updated 2 years ago