moshi4 / FastDTLmapperLinks
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆16Updated 2 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- Genome alignment and synteny plots☆32Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 8 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ☆15Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- ☆22Updated 11 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆17Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 weeks ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- ☆28Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 7 months ago