moshi4 / FastDTLmapperLinks
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆15Updated 2 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆16Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆10Updated 2 years ago
- Genome-Genome circle synteny☆25Updated last year
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 months ago
- Diploid genome assembly analysis tools☆14Updated 8 months ago
- ☆11Updated last month
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- ContScout sequence contamination filter tool☆20Updated 2 weeks ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 4 years ago
- ☆20Updated last year