Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆17Dec 29, 2022Updated 3 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Updated this week
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Aug 20, 2024Updated last year
- ☆24Apr 17, 2025Updated 10 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 3 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆15Mar 13, 2024Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- IslandPath standalone software☆36Nov 7, 2023Updated 2 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Dec 8, 2022Updated 3 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- ☆24Apr 22, 2025Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Apr 20, 2023Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Jul 28, 2024Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated last month
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆21Jan 21, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 3 years ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 3 months ago
- ☆16Nov 19, 2025Updated 3 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- ☆12Mar 8, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 7 months ago