moshi4 / FastDTLmapperLinks
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆17Updated 2 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆13Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated this week
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆35Updated 3 weeks ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Automatic evaluation of HGTs☆30Updated 10 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 weeks ago
- ☆15Updated last year
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago