moshi4 / FastDTLmapperLinks
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
☆15Updated 2 years ago
Alternatives and similar repositories for FastDTLmapper
Users that are interested in FastDTLmapper are comparing it to the libraries listed below
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- ☆25Updated 10 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆17Updated 4 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 10 months ago
- Automatic evaluation of HGTs☆30Updated 5 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- ☆22Updated 11 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 2 years ago
- ☆15Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆11Updated 3 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆46Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆19Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- Genome size estimation from long read overlaps☆58Updated last week