taotaoyuan / genome-assemble-and-annotation
基因组组装注释流程及脚本
☆15Updated 2 years ago
Alternatives and similar repositories for genome-assemble-and-annotation:
Users that are interested in genome-assemble-and-annotation are comparing it to the libraries listed below
- I often use some of the self-written programs.☆15Updated last month
- GWAS analysis process based on EMMAX software☆11Updated last year
- ☆10Updated 3 years ago
- ☆24Updated 2 years ago
- ☆15Updated 2 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 7 months ago
- ☆16Updated 4 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆17Updated last year
- Killifish genomics scripts☆12Updated 4 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14Updated 3 years ago
- ☆14Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- ☆23Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆21Updated 10 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆26Updated 6 years ago
- ☆22Updated last year
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 weeks ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆29Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated 2 years ago