Alternatives and similar repositories for genome-assemble-and-annotation

Users that are interested in genome-assemble-and-annotation are comparing it to the libraries listed below

• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆16Updated 2 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆12Updated 3 months ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆21Updated 11 months ago
• ShawnWx2019 / emmax-pipeline
  GWAS analysis process based on EMMAX software
  ☆11Updated last year
• YinYuan-001 / muntjac_code
  ☆10Updated 3 years ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆24Updated last year
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 2 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• byemaxx / callCodeml
  This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)
  ☆18Updated 3 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated 3 weeks ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 9 months ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• simon19891216 / GFAP
  a software for annotating plant genes
  ☆22Updated last year
• ChuanzhengWei / sorghum_T2T
  The codes to assemble two sorghum cultivars
  ☆10Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆17Updated 3 weeks ago
• qiangh06 / Setaria-pan-genome
  Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…
  ☆25Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆17Updated 3 weeks ago
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆11Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 4 years ago