JianjunJin / Traversome
genomic variant frequency estimation
☆12Updated 2 months ago
Alternatives and similar repositories for Traversome:
Users that are interested in Traversome are comparing it to the libraries listed below
- PECAT, a phased error correct and assembly tool☆50Updated 2 months ago
- De novo construction of isoforms from long-read data☆27Updated 4 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated 10 months ago
- ☆41Updated this week
- Evaluating genome assemblies☆88Updated 3 weeks ago
- ☆60Updated last year
- ☆30Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 months ago
- Graph-based assembly phasing☆75Updated 4 months ago
- Correct and scaffold assemblies using long reads☆50Updated last year
- ☆29Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆41Updated last year
- High-precision TE Annotator☆105Updated 3 weeks ago
- De novo clustering of long transcript reads into genes☆59Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 8 months ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated last month
- MCHelper: An automatic tool to curate transposable element libraries☆34Updated last week
- HELIANO is a software for detection and classification of Helitron-like elements.☆26Updated 4 months ago
- A organelle de novo genome assembly toolkit☆55Updated last month
- Close assembly gaps using long-reads at high accuracy.☆48Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆21Updated 10 months ago
- Structural Variant Identification Method using Genome Assemblies☆107Updated 2 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆31Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- a simple tool for listing conda environments with descriptions☆12Updated this week
- Plasmid analysis using rearrangement distances☆40Updated 4 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated 3 weeks ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated 2 weeks ago
- assembly evaluation tool☆35Updated 2 years ago