JianjunJin / TraversomeLinks
genomic variant frequency estimation
☆11Updated 4 months ago
Alternatives and similar repositories for Traversome
Users that are interested in Traversome are comparing it to the libraries listed below
Sorting:
- PECAT, a phased error correct and assembly tool☆51Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆28Updated 6 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆28Updated last year
- ☆47Updated this week
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆22Updated last month
- Evaluating genome assemblies☆97Updated 2 weeks ago
- ☆35Updated last month
- HELIANO is a software for detection and classification of Helitron-like elements.☆28Updated 6 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆46Updated 2 years ago
- a simple tool for listing conda environments with descriptions☆13Updated 2 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆31Updated last week
- ☆30Updated last month
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Correct and scaffold assemblies using long reads☆54Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆91Updated 10 months ago
- ☆64Updated 2 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- Graph-based assembly phasing☆85Updated last month
- De novo clustering of long transcript reads into genes☆66Updated last month
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 4 months ago
- ☆28Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆20Updated 3 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago