JianjunJin / TraversomeLinks
genomic variant frequency estimation
☆11Updated 5 months ago
Alternatives and similar repositories for Traversome
Users that are interested in Traversome are comparing it to the libraries listed below
Sorting:
- PECAT, a phased error correct and assembly tool☆53Updated last week
- De novo construction of isoforms from long-read data☆31Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- ☆52Updated this week
- ☆63Updated 2 years ago
- Correct and scaffold assemblies using long reads☆54Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 2 months ago
- ☆31Updated 2 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆47Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated 11 months ago
- Evaluating genome assemblies☆97Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 8 months ago
- ☆37Updated 2 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- ✏️ Genome assembly polishing & SNV detection☆68Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆34Updated last month
- a simple tool for listing conda environments with descriptions☆13Updated 3 months ago
- Plasmid analysis using rearrangement distances☆42Updated last month
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆31Updated last month
- De novo clustering of long transcript reads into genes☆66Updated 2 months ago
- ☆20Updated 10 months ago
- Synteny Mapping and Analysis Program☆26Updated this week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆29Updated 2 weeks ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆28Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago