The IntroBlocker ancestry inference algorithm
☆18Oct 24, 2023Updated 2 years ago
Alternatives and similar repositories for IntroBlocker
Users that are interested in IntroBlocker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 3 years ago
- ☆21Dec 13, 2024Updated last year
- ☆10Jan 27, 2025Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆12May 24, 2022Updated 4 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jul 27, 2026Updated 2 weeks ago
- ☆43Jan 19, 2024Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated this week
- ☆17Mar 17, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆45Dec 11, 2025Updated 7 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- genomic variant frequency estimation☆12Sep 7, 2025Updated 11 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆31Apr 22, 2026Updated 3 months ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆33Apr 7, 2025Updated last year
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated last month
- ☆37Aug 3, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆22Updated this week
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆15May 3, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 9 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆48Jul 22, 2026Updated 2 weeks ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- ☆12Sep 6, 2019Updated 6 years ago