The IntroBlocker ancestry inference algorithm
☆17Oct 24, 2023Updated 2 years ago
Alternatives and similar repositories for IntroBlocker
Users that are interested in IntroBlocker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 3 years ago
- ☆10Jan 27, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆34Feb 13, 2026Updated 3 months ago
- ☆21Dec 13, 2024Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- ☆12May 24, 2022Updated 3 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆43Apr 27, 2026Updated 3 weeks ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated this week
- ☆17Mar 17, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆43Jan 19, 2024Updated 2 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 10 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- ☆18Jan 29, 2025Updated last year
- genomic variant frequency estimation☆11Sep 7, 2025Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- ☆31Apr 7, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆32Jan 3, 2025Updated last year
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- implicit pangenome graph☆103Apr 24, 2026Updated 3 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 3 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- ☆45Dec 11, 2025Updated 5 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Multiple sequence alignment of long tandem repeats☆27May 12, 2026Updated last week
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 6 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- ☆12Sep 6, 2019Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago