A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.
☆14Mar 4, 2022Updated 4 years ago
Alternatives and similar repositories for transposon_annotation_tools
Users that are interested in transposon_annotation_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transposon classification tools RFSB, part of TransposonUltimate☆14Mar 27, 2024Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- Transposon annotation tool "resonaTE" (part of TransposonUltimate)☆18Mar 4, 2022Updated 4 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated last year
- ☆17Oct 7, 2024Updated 2 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆37Sep 11, 2025Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Sep 17, 2026Updated last month
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Code repository for the Global Ant Genomics Alliance☆18Jun 16, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- ☆11Jan 8, 2026Updated 9 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 3 months ago
- ☆10Sep 10, 2021Updated 5 years ago
- ☆17Jun 21, 2022Updated 4 years ago
- A tool for motif annotation and visualization in tandem repeats.☆15May 26, 2025Updated last year
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- ☆17Nov 19, 2025Updated 11 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated 2 years ago
- Methods for assembling high-quality genomes☆12Jul 7, 2023Updated 3 years ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆20Sep 11, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 9 months ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated 2 weeks ago
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- ☆10Sep 17, 2026Updated last month
- ☆16Apr 3, 2023Updated 3 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Network inference by fusing data from diverse distributions☆14Nov 25, 2016Updated 9 years ago