amvarani / Plant_Annotation_TEs
Methods and recipes for Plant Genome Annotation - Transposable Elements
☆19Updated last year
Alternatives and similar repositories for Plant_Annotation_TEs:
Users that are interested in Plant_Annotation_TEs are comparing it to the libraries listed below
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆27Updated 3 years ago
- ☆22Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆21Updated last year
- ☆16Updated 4 months ago
- ☆20Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated 2 weeks ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 8 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- ☆39Updated last year
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago
- ☆23Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆40Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- This is a method to find telomeres and centromeres in plants.☆38Updated last year
- ☆29Updated 2 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 5 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- ☆21Updated last year
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- ☆20Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated last month
- ☆28Updated 6 months ago