amvarani / Plant_Annotation_TEsLinks
Methods and recipes for Plant Genome Annotation - Transposable Elements
☆20Updated 4 months ago
Alternatives and similar repositories for Plant_Annotation_TEs
Users that are interested in Plant_Annotation_TEs are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- The IntroBlocker ancestry inference algorithm☆16Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- ☆28Updated 6 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Construct and Analyze the North American Vitis pangenome☆25Updated 2 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 9 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- ☆28Updated 2 years ago
- ☆12Updated 2 years ago
- ☆31Updated 9 months ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆21Updated last year
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆24Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆43Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- ☆25Updated 3 years ago
- issues for semina "Data Visulization"☆13Updated 4 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year