Methods and recipes for Plant Genome Annotation - Transposable Elements
☆21Jun 10, 2025Updated last year
Alternatives and similar repositories for Plant_Annotation_TEs
Users that are interested in Plant_Annotation_TEs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Domain based annotation of transposable elements☆23Updated this week
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 6 months ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 3 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- ☆87Jul 12, 2024Updated 2 years ago
- ☆11Updated this week
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Automated pipeline for enrichment analysis in non-model organisms !☆16Feb 8, 2026Updated 5 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated last month
- ☆12Jun 12, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- conserved non-coding sequence☆18Feb 21, 2022Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆22Jul 14, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 9 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- ☆31Apr 16, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Jul 25, 2021Updated 4 years ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Organellar genome assembly☆30May 22, 2026Updated 2 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 8 months ago
- ☆10Jun 13, 2020Updated 6 years ago