amvarani / Plant_Annotation_TEs
Methods and recipes for Plant Genome Annotation - Transposable Elements
☆18Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Plant_Annotation_TEs
- ☆20Updated 3 months ago
- ☆16Updated last month
- ☆21Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆22Updated last year
- ☆24Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- ☆22Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 3 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago
- ☆36Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated 10 months ago
- ☆20Updated 8 months ago
- ☆14Updated 10 months ago
- ☆28Updated 2 months ago
- ☆11Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆20Updated last year
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated 2 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆23Updated 7 months ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year