Alternatives and similar repositories for GameteBinning_tetraploid

Users that are interested in GameteBinning_tetraploid are comparing it to the libraries listed below

• yilinZhang-bio / Watermelon-pangenome
  ☆27Updated 2 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆29Updated 5 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated 2 years ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆10Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 6 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 5 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 4 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆22Updated 4 months ago
• baduelp / public
  ☆16Updated last year
• pan-sol / pan-sol-pipelines
  ☆10Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 7 months ago
• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 5 years ago
• tangerzhang / calc_switchErr
  ☆31Updated 9 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 7 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆36Updated 7 months ago