schneebergerlab / GameteBinning_tetraploidLinks
This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
☆12Updated 4 years ago
Alternatives and similar repositories for GameteBinning_tetraploid
Users that are interested in GameteBinning_tetraploid are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 years ago
- ☆29Updated 2 years ago
- ☆14Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆25Updated 3 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 3 weeks ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆16Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆16Updated last year
- ☆29Updated 7 months ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆31Updated 10 months ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆31Updated 5 months ago
- ☆31Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- ☆43Updated last year
- ☆16Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Updated 12 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year