A tool for motif annotation and visualization in tandem repeats.
☆15May 26, 2025Updated last year
Alternatives and similar repositories for MotifScope
Users that are interested in MotifScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆36Mar 4, 2026Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆142Jun 10, 2026Updated 2 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- ☆18Aug 14, 2024Updated 2 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 5 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆38Sep 17, 2022Updated 3 years ago
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- ☆11Sep 4, 2024Updated last year
- ☆67Apr 9, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- Scripts to score and find the optimal guess in Wordle https://www.tiktok.com/@crvlwanek/video/7057703711862377775?is_copy_url=1&is_from_w…☆11Jan 29, 2022Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated 11 months ago
- ☆26Aug 15, 2025Updated 11 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- ☆30Oct 20, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- mist R package files☆10Jul 15, 2026Updated 3 weeks ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 2 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- ☆12Apr 16, 2024Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- an efficient Hi-C data processing pipeline☆19Mar 26, 2024Updated 2 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆19May 9, 2024Updated 2 years ago