BGQ / ORPALinks
Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆15Updated 2 years ago
Alternatives and similar repositories for ORPA
Users that are interested in ORPA are comparing it to the libraries listed below
Sorting:
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- ☆29Updated 3 years ago
- Gene Family Annotation Workflow☆11Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆19Updated last week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- ☆15Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆44Updated 3 weeks ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆36Updated 2 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Updated last year
- ☆21Updated last year