Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆15Aug 27, 2023Updated 3 years ago
Alternatives and similar repositories for ORPA
Users that are interested in ORPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 2 months ago
- ☆16Jul 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆94Jul 31, 2026Updated last month
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- ☆26Aug 15, 2025Updated last year
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆38Feb 26, 2026Updated 6 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- ☆19Jul 12, 2026Updated last month
- ☆45Oct 29, 2022Updated 3 years ago
- ☆27Jun 27, 2026Updated 2 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆20May 17, 2023Updated 3 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- ☆13Mar 8, 2024Updated 2 years ago
- defusion☆14Aug 24, 2021Updated 5 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated 3 weeks ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last week
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Oct 30, 2019Updated 6 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 5 months ago
- A machine learning approach to alignment filtering☆16Jun 18, 2026Updated 2 months ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆48Jul 22, 2026Updated last month
- ☆41Jun 8, 2023Updated 3 years ago
- An ultra-fast gzip file tools☆28Jun 23, 2026Updated 2 months ago