BGQ / ORPALinks
Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆13Updated last year
Alternatives and similar repositories for ORPA
Users that are interested in ORPA are comparing it to the libraries listed below
Sorting:
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- ☆27Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- Consensus genome annotation using OMA☆24Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- ☆20Updated last year
- ☆15Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 2 months ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- ☆11Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Gene Family Annotation Workflow☆11Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆14Updated last month
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆17Updated 7 months ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- ☆28Updated last year