BGQ / ORPALinks
Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆13Updated last year
Alternatives and similar repositories for ORPA
Users that are interested in ORPA are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 6 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- Gene Family Annotation Workflow☆11Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- ☆20Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆17Updated 8 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆13Updated 3 years ago
- chloroplast genome assembly using long reads data☆13Updated last week
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- ☆15Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Updated 5 months ago