Alternatives and similar repositories for ORPA

Users that are interested in ORPA are comparing it to the libraries listed below

• lardo / khaper
  ☆27Updated 2 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last month
• SunPengChuan / wgdi-example
  ☆16Updated 5 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated last week
• yhw320 / PanSyn
  ☆20Updated last year
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• qunjie-zhang / gfanno
  Gene Family Annotation Workflow
  ☆11Updated last year
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆25Updated last month
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 5 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆10Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 4 months ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 11 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆31Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆13Updated last month
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆12Updated 2 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 2 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 7 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆19Updated 2 weeks ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• DerKevinRiehl / transposon_annotation_tools
  A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…
  ☆13Updated 3 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆19Updated last year