Alternatives and similar repositories for OGFilter

Users that are interested in OGFilter are comparing it to the libraries listed below

• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆32Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆20Updated this week
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated last year
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated 8 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated 3 weeks ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆37Updated 2 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆31Updated last month
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 3 weeks ago
• MrTomRod / orthofinder-tools
  Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …
  ☆19Updated last year
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆21Updated 5 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated last month
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• at-cg / RAFT
  ☆28Updated last year
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆28Updated 9 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 8 months ago
• i10labtitech / GINGER
  ☆29Updated last year
• kavonrtep / dante_ltr
  ☆10Updated 4 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆16Updated 4 years ago
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆21Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆23Updated last month