DessimozLab / omamerLinks
OMAmer - tree-driven and alignment-free protein assignment to sub-families
☆22Updated 2 weeks ago
Alternatives and similar repositories for omamer
Users that are interested in omamer are comparing it to the libraries listed below
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- ☆24Updated 7 months ago
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆44Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆22Updated 11 years ago
- ☆26Updated 4 years ago
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 7 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- Reference genome quality scores☆21Updated 4 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago