DessimozLab / omamerLinks
OMAmer - tree-driven and alignment-free protein assignment to sub-families
☆19Updated last week
Alternatives and similar repositories for omamer
Users that are interested in omamer are comparing it to the libraries listed below
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- ☆20Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Reference genome quality scores☆21Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 4 months ago
- ☆24Updated 4 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆14Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- transposable element typing pipeline☆19Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- ☆22Updated 11 years ago
- Better Alignments with Translated HMMER☆21Updated this week
- Infering ancestral synteny with hierarchical orthologous groups☆24Updated 2 weeks ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Genomic sequence aligner☆26Updated last month
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆26Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago