DessimozLab / omamerLinks
OMAmer - tree-driven and alignment-free protein assignment to sub-families
☆18Updated this week
Alternatives and similar repositories for omamer
Users that are interested in omamer are comparing it to the libraries listed below
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- ☆20Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- ☆23Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A derivative of GenomeScope2.0 modified to work with FastK☆9Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- ☆26Updated this week
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- ☆16Updated 7 months ago
- ☆20Updated 3 years ago
- Better Alignments with Translated HMMER☆21Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- A comparative genome scaffolding tool☆17Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated 2 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago