Bitbol-Lab / ProtMamba-ssmLinks
ProtMamba: a homology-aware but alignment-free protein state space model
☆81Updated 6 months ago
Alternatives and similar repositories for ProtMamba-ssm
Users that are interested in ProtMamba-ssm are comparing it to the libraries listed below
Sorting:
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆156Updated 4 months ago
- PLM based active learning model for protein engineering☆84Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 7 months ago
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 8 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆113Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 6 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆77Updated 4 months ago
- Structure prediction of alternative protein conformations☆80Updated 9 months ago
- ☆71Updated 8 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆86Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- Efficient implementatin of ESM family.☆77Updated 3 months ago
- ☆97Updated last week
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 2 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Directed evolution of proteins in sequence space with gradients☆93Updated last month
- LoRA for protein language models☆45Updated last year
- Public Release of ProGen3 family of Models☆91Updated 4 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆113Updated 3 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆119Updated 2 weeks ago
- ☆107Updated last week
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆34Updated last year
- Template-based protein design with Raygun☆76Updated last week
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- ☆71Updated last year
- Consolidated repository to perform RLXF☆36Updated last month
- Official implementation of "Learning the language of protein structures"☆39Updated 5 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year