Bitbol-Lab / ProtMamba-ssm
ProtMamba: a homology-aware but alignment-free protein state space model
☆60Updated 2 weeks ago
Alternatives and similar repositories for ProtMamba-ssm:
Users that are interested in ProtMamba-ssm are comparing it to the libraries listed below
- A standardized protein design benchmark for motif-scaffolding problems☆48Updated last month
- ☆57Updated 2 weeks ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆54Updated 3 weeks ago
- LoRA for protein language models☆36Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆72Updated last month
- Aligning protein generative models with experimental fitness☆89Updated 5 months ago
- Official implementation of "Learning the language of protein structures"☆25Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated this week
- ☆32Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Efficient implementatin of ESM family.☆54Updated 2 months ago
- ☆45Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated 11 months ago
- ☆26Updated 10 months ago
- ☆65Updated 3 weeks ago
- Structure prediction of alternative protein conformations☆75Updated last month
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆26Updated last year
- PLM based active learning model for protein engineering☆77Updated 8 months ago
- ML-guided enzyme engineering☆60Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing