Alternatives and similar repositories for proteina

Users that are interested in proteina are comparing it to the libraries listed below

• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆207Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆123Updated 2 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆199Updated 4 months ago
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆179Updated last year
• bjing2016 / EigenFold
  EigenFold: Generative Protein Structure Prediction with Diffusion Models
  ☆173Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆174Updated 4 months ago
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆194Updated 3 weeks ago
• BytedProtein / ByProt
  ☆192Updated 9 months ago
• aqlaboratory / genie2
  Protein structure diffusion model for unconditional protein generation and motif scaffolding
  ☆158Updated last year
• microsoft / protein-frame-flow
  Fast protein backbone generation with SE(3) flow matching.
  ☆267Updated 11 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆125Updated 7 months ago
• levinthal / Pallatom
  ☆95Updated 3 weeks ago
• jasonkyuyim / multiflow
  ☆175Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆217Updated 10 months ago
• BioinfoMachineLearning / PoseBench
  Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
  ☆158Updated 3 months ago
• zhanghaicang / carbonmatrix_public
  ☆115Updated last week
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆110Updated 3 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆327Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆78Updated last year
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆82Updated 3 weeks ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆242Updated last month
• bjing2016 / mdgen
  Generative modeling of molecular dynamics trajectories
  ☆156Updated 2 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆76Updated 2 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆184Updated 2 months ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆229Updated 2 weeks ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆131Updated last week
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆291Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆126Updated 2 weeks ago