Alternatives and similar repositories for foldmason

Users that are interested in foldmason are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆97Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆104Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆177Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆79Updated 5 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 4 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆44Updated 6 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆135Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆173Updated 9 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 2 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆294Updated last year
• mattarnoldbio / alphapickle
  ☆33Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆113Updated 4 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated this week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆51Updated 2 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 10 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆116Updated 3 years ago
• jcheongs / alphafold-multimer
  ☆33Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 10 months ago
• tymor22 / tm-vec
  ☆76Updated last year
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 7 months ago
• TattaBio / gLM2
  ☆78Updated last year
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆103Updated 4 years ago