Alternatives and similar repositories for foldmason

Users that are interested in foldmason are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 2 weeks ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆166Updated 6 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆41Updated 3 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆160Updated 11 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆75Updated 2 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆115Updated last month
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆75Updated 2 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆95Updated last week
• mattarnoldbio / alphapickle
  ☆33Updated last year
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 5 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 9 months ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆104Updated 4 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆131Updated last year
• jcheongs / alphafold-multimer
  ☆31Updated 3 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆42Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆276Updated 10 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆105Updated 2 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 11 months ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆115Updated last year
• ncbi / SSDraw
  ☆84Updated 3 weeks ago
• KosinskiLab / AlphaPulldown
  ☆298Updated this week
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated last month
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆48Updated 6 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆89Updated this week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 8 months ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆179Updated 2 weeks ago