steineggerlab / foldmasonLinks
Multiple Protein Structure Alignment at Scale with FoldMason
☆174Updated last month
Alternatives and similar repositories for foldmason
Users that are interested in foldmason are comparing it to the libraries listed below
Sorting:
- snakemake pipeline for creating trees from sequence sets☆79Updated 2 weeks ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆130Updated 6 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆106Updated 9 months ago
- MMseqs2 app to run on your workstation or servers☆81Updated this week
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆99Updated 10 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆141Updated last month
- Fast protein structure searching or your money back☆103Updated last month
- Protein 3D structure prediction pipeline☆80Updated this week
- Bilingual Language Model for Protein Sequence and Structure☆247Updated 5 months ago
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆36Updated 3 weeks ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆71Updated 5 months ago
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Protein structure alignment and search algorithm☆59Updated this week
- ☆31Updated last year
- A domain parser for Alphafold models☆38Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆55Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- ☆277Updated last week
- ☆85Updated last year
- Protein structure comparison tools such as SSAP and SNAP☆64Updated last year
- ☆49Updated 2 months ago
- A tool for protein and protein complex structure prediction.☆28Updated this week
- Evolutionary velocity with protein language models☆90Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆94Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆32Updated 6 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆156Updated 8 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year