Alternatives and similar repositories for foldmason

Users that are interested in foldmason are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆130Updated 6 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆106Updated 9 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆81Updated this week
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆99Updated 10 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆141Updated last month
• greener-group / progres
  Fast protein structure searching or your money back
  ☆103Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆247Updated 5 months ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆101Updated 3 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 4 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆36Updated 3 weeks ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆71Updated 5 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆34Updated 5 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆59Updated this week
• mattarnoldbio / alphapickle
  ☆31Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆55Updated 3 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• KosinskiLab / AlphaPulldown
  ☆277Updated last week
• ncbi / SSDraw
  ☆85Updated last year
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆28Updated this week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆94Updated last month
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆32Updated 6 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆156Updated 8 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year