Alternatives and similar repositories for Prot-xLSTM

Users that are interested in Prot-xLSTM are comparing it to the libraries listed below

• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated 2 months ago
• ml-jku / mgenerators-failure-modes
  Shows some of the ways molecule generation and optimization can go wrong
  ☆17Updated last year
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆12Updated 3 weeks ago
• ml-jku / MHNfs
  ☆21Updated last year
• LSSI-ETH / plmfit
  PLMFit platform for TL on PLMs
  ☆16Updated last week
• HySonLab / Ligand_Generation
  Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning
  ☆30Updated last year
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆15Updated last week
• PaccMann / paccmann_kinase_binding_residues
  Comparison of active site and full kinase sequences for drug-target affinity prediction and molecular generation. Full paper: https://pub…
  ☆36Updated 2 years ago
• deskk / AbGPT
  ☆11Updated 9 months ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated last year
• JocelynSong / NAEPro
  ☆12Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 9 months ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆14Updated 3 weeks ago
• ETHmodlab / molecular_design_with_beam_search
  ☆23Updated 3 years ago
• camlab-ethz / GEMS
  Protein-Ligand Binding Affinity Prediction with GNN and Transfer Learning From Protein Language Models
  ☆27Updated 2 weeks ago
• matmi8 / Zernike2D
  ☆9Updated last month
• thejonaslab / vonmises-icml-2023
  ☆10Updated last year
• clami66 / dgram2dmap
  Converts AlphaFold distograms into distance matrices and saves them into a number of formats
  ☆12Updated 2 years ago
• akds / CoevolveML
  Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
  ☆16Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆37Updated 2 months ago
• zanderharteveld / genesis
  protein backbone refinement
  ☆15Updated 8 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆42Updated 6 months ago
• keiserlab / autofragdiff
  Autoregressive fragment-based diffusion for target-aware ligand design
  ☆29Updated last year
• ml-jku / hyper-dti
  HyperPCM: Robust task-conditioned modeling of drug-target interactions
  ☆36Updated 8 months ago
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated 2 years ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆41Updated 3 weeks ago
• Vincentx15 / atom2D
  ☆12Updated 6 months ago
• MolecularAI / exahustive_search_mol2mol
  ☆11Updated 8 months ago
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆18Updated 2 years ago
• Carlssonlab / conformalpredictor
  Machine learning accelerated docking screens
  ☆53Updated 4 months ago