A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleaned" domain structure in CATH.
☆40Jul 25, 2024Updated 2 years ago
Alternatives and similar repositories for Prop3D
Users that are interested in Prop3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 4 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆34Sep 19, 2025Updated last year
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Apr 25, 2021Updated 5 years ago
- Evolutionary protein-protein interface classifier☆14Sep 20, 2026Updated last month
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- Protein Structure Archiver☆16Sep 10, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆48May 22, 2025Updated last year
- ☆16Feb 13, 2026Updated 8 months ago
- ☆10Apr 25, 2024Updated 2 years ago
- ☆91Nov 18, 2025Updated 11 months ago
- ☆47Sep 16, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆75Feb 13, 2026Updated 8 months ago
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- ☆10Apr 12, 2023Updated 3 years ago
- ☆15Sep 4, 2026Updated last month
- ☆17Dec 10, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆27Mar 6, 2025Updated last year
- ☆11Oct 7, 2025Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆126Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆95Sep 25, 2024Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆18May 4, 2026Updated 5 months ago
- HInt (Homologous Interactions)☆10Updated this week
- A structure- and epistasis-aware model for predicting higher-order protein mutant fitness.☆19Oct 13, 2026Updated 2 weeks ago
- ☆111Updated this week
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 2 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆90Jul 2, 2025Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Clusters protein chains based on CA distance difference☆19Oct 9, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 6 months ago
- ☆16Apr 3, 2025Updated last year
- ☆43Jun 17, 2025Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Aug 13, 2026Updated 2 months ago
- A lightweight library for loading and manipulating biomolecular structures☆24Aug 8, 2026Updated 2 months ago
- Code for deep learning guided design of dynamic proteins☆37Jul 16, 2024Updated 2 years ago
- No description yet.☆19Aug 8, 2024Updated 2 years ago