bouralab / Prop3DLinks
A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleaned" domain structure in CATH.
☆38Updated last year
Alternatives and similar repositories for Prop3D
Users that are interested in Prop3D are comparing it to the libraries listed below
Sorting:
- Explore protein fold space with deep generative models☆16Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- ☆16Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆16Updated last year
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆43Updated 7 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- ☆23Updated last month
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 7 months ago
- ☆27Updated 2 weeks ago
- Machine learning prediction of enzyme optimum pH☆48Updated 8 months ago
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆26Updated 2 weeks ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated 2 weeks ago
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆34Updated 6 months ago
- ☆22Updated last month
- Some scripts that I keep using over and over.☆21Updated 5 months ago
- ☆22Updated 8 months ago
- Protein Origami via Genetic Fusions☆16Updated 3 years ago
- ☆21Updated 2 years ago
- Physical energy function for protein sequence design☆34Updated 2 years ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆18Updated 2 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated last year
- MEGADOCK on Google Colaboratory☆20Updated 2 years ago
- Ultra-fast in-silico structure mutation☆36Updated 8 months ago
- ☆21Updated last year
- Python package to manage protein structures and their annotations☆45Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆29Updated 9 months ago
- Fragment binding prediction with ColabFold☆41Updated last month
- A Unified Approach to Protein Engineering☆42Updated last year
- Efficient manipulation of protein structures in Python☆60Updated 3 months ago