A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleaned" domain structure in CATH.
☆38Jul 25, 2024Updated last year
Alternatives and similar repositories for Prop3D
Users that are interested in Prop3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Protein Structure Archiver☆15Sep 10, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated last month
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago
- ☆15Jun 25, 2026Updated 3 weeks ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆47May 22, 2025Updated last year
- ☆16Dec 10, 2024Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆121Jul 10, 2026Updated last week
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- ☆46Jan 10, 2024Updated 2 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆39Mar 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- ☆40Jun 17, 2025Updated last year
- Shrinking Proteins with Diffusion☆29Jan 8, 2026Updated 6 months ago
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆279Feb 14, 2024Updated 2 years ago
- ☆74Feb 13, 2026Updated 5 months ago
- ☆13May 24, 2026Updated last month
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆119Dec 7, 2022Updated 3 years ago
- ☆90Nov 18, 2025Updated 8 months ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 3 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- ☆92Sep 25, 2024Updated last year
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- ☆34Sep 19, 2025Updated 10 months ago
- ☆32Feb 5, 2025Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Apr 10, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 3 months ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 4 months ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆27Apr 9, 2026Updated 3 months ago
- ☆15Mar 28, 2025Updated last year
- ☆33Mar 2, 2026Updated 4 months ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- ☆10Nov 10, 2023Updated 2 years ago