☆23Jul 14, 2023Updated 2 years ago
Alternatives and similar repositories for _2022_functional-sites-cagiada
Users that are interested in _2022_functional-sites-cagiada are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- ☆81Jun 29, 2025Updated 9 months ago
- ☆15Apr 3, 2025Updated last year
- A step-by-step tutorial to run Molecular Dynamics Simulations with enhanced sampling of a pepitide using PLUMED implemented in GROMACS to…☆15Mar 4, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆11Oct 2, 2025Updated 6 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- ☆14Feb 13, 2023Updated 3 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆103Updated this week
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆11Oct 20, 2025Updated 5 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12Jan 25, 2026Updated 2 months ago
- ☆74Feb 13, 2026Updated 2 months ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 7 months ago
- ☆22Nov 13, 2023Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- ☆15Oct 9, 2025Updated 6 months ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆15Mar 3, 2026Updated last month
- GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling☆18Sep 7, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆29May 26, 2025Updated 10 months ago
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆15Jun 15, 2019Updated 6 years ago
- ☆20Oct 4, 2022Updated 3 years ago
- ☆79Aug 26, 2025Updated 7 months ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 2 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- Design data and process for the AdaptyvBio protein design competition☆11Dec 11, 2024Updated last year
- ☆57Feb 16, 2026Updated 2 months ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆86Dec 3, 2025Updated 4 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆184Oct 7, 2025Updated 6 months ago
- ☆13Sep 29, 2023Updated 2 years ago