Bitbol-Lab / rag-esmLinks
RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
☆12Updated this week
Alternatives and similar repositories for rag-esm
Users that are interested in rag-esm are comparing it to the libraries listed below
Sorting:
- bakerlab pymol scripts☆23Updated 5 years ago
- ☆27Updated 4 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 5 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- ☆25Updated last year
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- Kuhlman Lab Installation of AlphaFold3☆26Updated last month
- Code for deep learning guided design of dynamic proteins☆30Updated 11 months ago
- PPI version of Pythia☆11Updated 7 months ago
- ☆27Updated 6 months ago
- ☆19Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆11Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- Metrics for our protein design competitions.☆31Updated 7 months ago
- ☆13Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆49Updated last month
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated last month
- ☆32Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆15Updated 3 months ago
- protein structure generation with sparse all-atom denoising models☆32Updated 3 weeks ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆26Updated 3 weeks ago
- ☆19Updated 2 years ago
- ☆38Updated 9 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 7 months ago
- Generative diverse protein backbones by protein language model☆32Updated 6 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated 10 months ago