Bitbol-Lab / rag-esmLinks
RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
☆16Updated last month
Alternatives and similar repositories for rag-esm
Users that are interested in rag-esm are comparing it to the libraries listed below
Sorting:
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- ☆28Updated 6 months ago
- ☆70Updated 4 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆33Updated last week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- ☆27Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- ☆38Updated 10 months ago
- ☆60Updated last year
- bakerlab pymol scripts☆24Updated 5 years ago
- An accurate and efficient protein sequence design approach☆24Updated 4 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- ☆15Updated last year
- ☆44Updated 10 months ago
- ☆36Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 8 months ago
- Making Protein folding accessible to all!☆22Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆39Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆31Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆30Updated 8 months ago
- Code for humanization of antibody and nanobody☆49Updated 8 months ago
- Baseline model for PPB-Affinity benchmark data☆27Updated 2 months ago
- protein structure generation with sparse all-atom denoising models☆35Updated last week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆43Updated 3 weeks ago
- ☆19Updated 9 months ago
- code for IDR binding paper 2025☆39Updated 5 months ago
- ☆16Updated 2 months ago
- ☆30Updated 4 months ago
- workflow used to prepare PPB-Affinity database☆26Updated 11 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆42Updated 8 months ago