Compressing protein structures effectively with torsion angles
☆189Feb 10, 2026Updated last month
Alternatives and similar repositories for foldcomp
Users that are interested in foldcomp are comparing it to the libraries listed below
Sorting:
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,192Mar 10, 2026Updated last week
- Fast protein structure searching or your money back☆118Updated this week
- ☆48Sep 25, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆264Jan 31, 2026Updated last month
- ☆211Apr 21, 2025Updated 11 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated 3 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆124Jan 16, 2026Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- ☆24Nov 14, 2025Updated 4 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Jun 9, 2025Updated 9 months ago
- Efficient manipulation of protein structures in Python☆65Sep 27, 2025Updated 5 months ago
- Bilingual Language Model for Protein Sequence and Structure☆303Mar 6, 2026Updated 2 weeks ago
- Official repository for the ProteinGym benchmarks☆402Jan 12, 2026Updated 2 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- ☆557Feb 6, 2025Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆376Jun 3, 2024Updated last year
- ☆92Sep 25, 2024Updated last year
- Python package to manage protein structures and their annotations☆45Feb 22, 2024Updated 2 years ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 6 months ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- Plausibility checks for generated molecule poses.☆363Mar 7, 2026Updated 2 weeks ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆175Feb 4, 2026Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- OmegaFold Release Code☆615Dec 12, 2022Updated 3 years ago
- Deep functional residue identification☆349Mar 24, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- ☆65Sep 14, 2023Updated 2 years ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago