westlake-repl / SaprotHub

Related projects ⓘ

Alternatives and complementary repositories for SaprotHub

• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆51Updated last year
• Kuhlman-Lab / evopro
  ☆70Updated 6 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆59Updated this week
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆61Updated 2 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆95Updated 3 months ago
• ikalvet / heme_binder_diffusion
  ☆94Updated last month
• zhanghaicang / carbonmatrix_public
  ☆96Updated 3 weeks ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆68Updated 6 months ago
• varun-shanker / structural-evolution
  ☆82Updated 4 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆59Updated last week
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆41Updated 5 months ago
• liuyf020419 / SCUBA-D
  ☆42Updated 7 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆68Updated 3 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆94Updated 2 years ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆84Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆125Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆34Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆82Updated 2 weeks ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆42Updated 3 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆43Updated last week
• jproney / AF2Rank
  ☆95Updated last year
• levinthal / Pallatom
  ☆65Updated 3 weeks ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆71Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆90Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆39Updated 2 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆45Updated 3 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆25Updated 5 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆93Updated 7 months ago
• bene837 / af2seq
  ☆38Updated 2 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆75Updated 2 months ago