☆88May 29, 2025Updated 9 months ago
Alternatives and similar repositories for ptm-mamba
Users that are interested in ptm-mamba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆85Jun 3, 2025Updated 9 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆315Jul 25, 2025Updated 7 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- ☆74Feb 13, 2026Updated last month
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Directed evolution of proteins in sequence space with gradients☆96Oct 18, 2025Updated 5 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 9 months ago
- ☆17Dec 13, 2020Updated 5 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆10Feb 4, 2025Updated last year
- ☆21Jul 18, 2024Updated last year
- ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.☆64Mar 7, 2025Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆99Dec 10, 2025Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆402Jan 12, 2026Updated 2 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆32Feb 12, 2026Updated last month
- ☆60Mar 25, 2024Updated last year
- Learning the language of protein-protein interactions☆139Jan 12, 2026Updated 2 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- ☆37Mar 30, 2025Updated 11 months ago
- Contrastive learning harmonizing protein language models and natural language models☆40Jun 12, 2024Updated last year
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆16Dec 21, 2025Updated 3 months ago
- Homomer symmetry prediction from protein sequence☆43Mar 13, 2025Updated last year
- PLM based active learning model for protein engineering☆85Aug 6, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated last year
- ☆96Oct 14, 2025Updated 5 months ago
- open source code for Tencent tFold☆146Mar 14, 2025Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- Protein prediction models implemented with Modal☆30Mar 9, 2026Updated 2 weeks ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago