Alternatives and similar repositories for FLOP

Users that are interested in FLOP are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated last year
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• HannesStark / CodonMPNN
  ☆28Updated 8 months ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆56Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 11 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆22Updated 9 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆44Updated 9 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆46Updated 7 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• luwei0917 / BindingGYM
  ☆28Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 9 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆32Updated 3 weeks ago
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• flagshippioneering / flash_ipa
  Efficient implementation of the IPA module.
  ☆29Updated last month
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆35Updated 3 weeks ago
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆31Updated 3 weeks ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 8 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆15Updated 2 weeks ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 4 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆103Updated 3 weeks ago
• alexechu / protpardelle
  ☆65Updated last year
• 3BioCompBio / RSALOR
  ☆34Updated last month