Unsupervised neural network for learning embeddings of GO terms.
☆21Feb 19, 2022Updated 4 years ago
Alternatives and similar repositories for anc2vec
Users that are interested in anc2vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Nov 14, 2025Updated 6 months ago
- Turning Ontologies Plus Annotation Properties into Vectors☆37Sep 26, 2020Updated 5 years ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated last year
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated 2 years ago
- Embeddings for ontologies in the Description Logic EL++☆28Feb 2, 2023Updated 3 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 3 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Jun 9, 2022Updated 4 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆26Jan 3, 2018Updated 8 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆53Jan 19, 2026Updated 4 months ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆152Mar 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Feb 7, 2022Updated 4 years ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆87Jun 3, 2025Updated last year
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆41Mar 10, 2026Updated 2 months ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- Transformer-based protein function Annotation with joint feature-Label Embedding☆38Dec 18, 2024Updated last year
- ☆51Dec 2, 2024Updated last year
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- [WWW'2024] "Simple Multigraph Convolution Networks"☆13May 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Updated this week
- Multiple Protein Structure Alignment at Scale with FoldMason☆278May 11, 2026Updated 3 weeks ago
- ☆23Mar 20, 2023Updated 3 years ago
- Representation learning for ontologies and their annotations☆21Apr 29, 2020Updated 6 years ago
- ☆18Dec 10, 2022Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆123Sep 15, 2020Updated 5 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- LillyMol Public Code☆17Updated this week
- ☆15Apr 30, 2025Updated last year
- ☆12Nov 15, 2018Updated 7 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago