Unsupervised neural network for learning embeddings of GO terms.
☆21Feb 19, 2022Updated 4 years ago
Alternatives and similar repositories for anc2vec
Users that are interested in anc2vec are comparing it to the libraries listed below
Sorting:
- ☆24Nov 14, 2025Updated 4 months ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated 9 months ago
- DeepGO with Fuzzy DL☆33Sep 19, 2022Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 5 years ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 10 months ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated last year
- Embeddings for ontologies in the Description Logic EL++☆28Feb 2, 2023Updated 3 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last month
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Jun 9, 2022Updated 3 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆23Jan 3, 2018Updated 8 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆51Jan 19, 2026Updated 2 months ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- ☆23Feb 7, 2022Updated 4 years ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆85Jun 3, 2025Updated 9 months ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Explore and download data from the recount3 project☆38Sep 24, 2025Updated 5 months ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆37Dec 18, 2024Updated last year
- ☆51Dec 2, 2024Updated last year
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- [WWW'2024] "Simple Multigraph Convolution Networks"☆13May 21, 2024Updated last year
- ☆17Feb 21, 2022Updated 4 years ago
- ☆12Feb 6, 2026Updated last month
- ☆23Mar 20, 2023Updated 3 years ago
- Representation learning for ontologies and their annotations☆21Apr 29, 2020Updated 5 years ago
- ☆17Dec 10, 2022Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 5 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago
- ☆13Jun 5, 2024Updated last year
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated last year
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- LillyMol Public Code☆16Mar 12, 2026Updated last week
- ☆15Apr 30, 2025Updated 10 months ago
- Scattering GCN: overcoming oversmoothness in graph convolutional networks☆25Jun 6, 2022Updated 3 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆16Sep 21, 2022Updated 3 years ago