pengzhangzhi / faplmLinks
FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
☆160Updated 5 months ago
Alternatives and similar repositories for faplm
Users that are interested in faplm are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated last month
- ProtMamba: a homology-aware but alignment-free protein state space model☆82Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆146Updated 8 months ago
- PLM based active learning model for protein engineering☆84Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- Dataset and package for working with protein-protein interactions in 3D☆99Updated 8 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆120Updated 2 weeks ago
- Improved antibody structure-based design using inverse folding☆147Updated 3 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆87Updated last year
- A generalized computational framework for biomolecular modeling.☆381Updated last week
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- ☆205Updated 8 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆178Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆167Updated 2 years ago
- Efficient implementatin of ESM family.☆78Updated 3 months ago
- ☆107Updated last week
- Generative Language Modeling for Antibody Design☆176Updated last year
- ☆132Updated 6 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 2 months ago
- Plugin for folding sequences directly in PyMOL☆112Updated 4 months ago
- Text-guided protein design☆90Updated last month
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆51Updated last month
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆170Updated 2 months ago
- ☆119Updated 6 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆216Updated 4 months ago
- Protein folding in Pymol☆127Updated last month
- Code for ColabDock paper☆150Updated 7 months ago
- ☆117Updated 5 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆108Updated 2 months ago
- Learning the language of protein-protein interactions☆107Updated 3 months ago