Alternatives and similar repositories for ThermoMPNN-D

Users that are interested in ThermoMPNN-D are comparing it to the libraries listed below

• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• bene837 / af2seq
  ☆44Updated 10 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆16Updated last month
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆33Updated last week
• regeneron-mpds / propermab
  ☆30Updated 4 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 3 weeks ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 8 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated last week
• danny305 / StabilityOracle
  ☆27Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 8 months ago
• bunzela / AIzymes
  ☆48Updated 2 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆31Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 8 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated last year
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆66Updated this week
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated 11 months ago
• ELELAB / RosettaDDGPrediction
  ☆72Updated 5 months ago
• skalyaanamoorthy / PSLMs
  ☆19Updated 9 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆29Updated 2 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆39Updated 5 months ago