A conditionally adapted protein language model for the generation of enzymes
☆24Nov 26, 2024Updated last year
Alternatives and similar repositories for ProCALM
Users that are interested in ProCALM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- ☆11Feb 3, 2026Updated 6 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆55Jul 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 2 weeks ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 9 months ago
- ☆31Dec 12, 2024Updated last year
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 6 months ago
- ☆21Nov 21, 2025Updated 8 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆105Apr 24, 2024Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆34Jul 16, 2024Updated 2 years ago
- Profluent-E1 family of Protein Encoder Models☆114Mar 11, 2026Updated 4 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 8 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆84Oct 24, 2025Updated 9 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆29Oct 28, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆64Feb 3, 2026Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆102Jul 29, 2024Updated 2 years ago
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- ☆137Jul 12, 2024Updated 2 years ago
- All-atom generative protein design using SE(3) flow matching☆27Feb 3, 2026Updated 6 months ago
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆84Jun 1, 2026Updated 2 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Feb 29, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago