Bilingual Language Model for Protein Sequence and Structure
☆301Jan 2, 2025Updated last year
Alternatives and similar repositories for ProstT5
Users that are interested in ProstT5 are comparing it to the libraries listed below
Sorting:
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Feb 21, 2026Updated last week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆253Jan 31, 2026Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆188Feb 10, 2026Updated 3 weeks ago
- ☆212Sep 24, 2024Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆305Apr 6, 2025Updated 10 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,291May 22, 2025Updated 9 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- ☆80Feb 11, 2026Updated 3 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Ankh: Optimized Protein Language Model☆241Jun 16, 2025Updated 8 months ago
- Improved antibody structure-based design using inverse folding☆153Dec 9, 2025Updated 2 months ago
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month
- A generative model for programmable protein design☆801Apr 11, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆516Oct 21, 2025Updated 4 months ago
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 4 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- List of papers about Proteins Design using Deep Learning☆1,889Updated this week
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- Efficient implementatin of ESM family.☆80Sep 9, 2025Updated 5 months ago
- Code for ColabDock paper☆151May 1, 2025Updated 10 months ago
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- ☆47Sep 25, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Jan 15, 2026Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆147May 29, 2025Updated 9 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,986Feb 7, 2024Updated 2 years ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- ☆2,253Jan 26, 2026Updated last month
- Phage Annotation using Protein Structures☆151Feb 9, 2026Updated 3 weeks ago