Bilingual Language Model for Protein Sequence and Structure
☆310Mar 6, 2026Updated last month
Alternatives and similar repositories for ProstT5
Users that are interested in ProstT5 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,226Mar 10, 2026Updated last month
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆593Mar 8, 2026Updated last month
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆271Apr 27, 2025Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆272Apr 27, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆308Apr 6, 2025Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,304May 22, 2025Updated 11 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆277Feb 14, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated last year
- Ankh: Optimized Protein Language Model☆246Jun 16, 2025Updated 10 months ago
- ☆213Sep 24, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆419Jul 3, 2023Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆525Mar 22, 2026Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated 2 years ago
- ☆86Feb 11, 2026Updated 2 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 6 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,059Feb 7, 2024Updated 2 years ago
- ☆49Sep 25, 2024Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Dec 12, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Improved antibody structure-based design using inverse folding☆159Dec 9, 2025Updated 4 months ago
- List of papers about Proteins Design using Deep Learning☆1,923Updated this week
- A generative model for programmable protein design☆814Apr 11, 2024Updated 2 years ago
- Code for ColabDock paper☆155May 1, 2025Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆668Jan 15, 2026Updated 3 months ago
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆205Feb 14, 2026Updated 2 months ago
- ☆2,322Mar 19, 2026Updated last month
- Official repository for the ProteinGym benchmarks☆421Mar 25, 2026Updated last month
- Phage Annotation using Protein Structures☆158Apr 27, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,041Apr 16, 2026Updated 2 weeks ago
- Efficient implementatin of ESM family.☆85Sep 9, 2025Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆247Mar 26, 2026Updated last month
- ☆27Feb 10, 2024Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆78Feb 24, 2025Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago