jozhang97 / ismLinks
☆31Updated 9 months ago
Alternatives and similar repositories for ism
Users that are interested in ism are comparing it to the libraries listed below
Sorting:
- Profluent-E1 family of Protein Encoder Models☆96Updated last month
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆37Updated 4 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Updated 4 months ago
- ☆23Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- ☆65Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆130Updated last month
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆56Updated 2 weeks ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆52Updated 2 weeks ago
- ☆29Updated last year
- ☆36Updated 5 months ago
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- A benchmark for 3D biomolecular structure prediction models☆67Updated 7 months ago
- Code for humanization of antibody and nanobody☆67Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆16Updated last month
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆20Updated 3 weeks ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆50Updated 2 weeks ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆18Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- workflow used to prepare PPB-Affinity database☆28Updated last year
- Homomer symmetry prediction from protein sequence☆39Updated 9 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆36Updated 4 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- ☆121Updated last month