Alternatives and similar repositories for ism

Users that are interested in ism are comparing it to the libraries listed below

• alexechu / protpardelle
  ☆65Updated 2 years ago
• flagshippioneering / flash_ipa
  [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
  ☆40Updated last month
• 3BioCompBio / AbAgym
  ☆16Updated 3 weeks ago
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆37Updated 4 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• luwei0917 / BindingGYM
  ☆36Updated 4 months ago
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆96Updated last month
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆40Updated 4 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆115Updated 6 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆52Updated this week
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆114Updated 2 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆71Updated last year
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 6 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆18Updated 4 months ago
• jozhang97 / MutateEverything
  ☆82Updated 5 months ago
• A4Bio / FoldToken_open
  ☆23Updated last year
• wengong-jin / DSMBind
  ☆96Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 3 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆71Updated 4 months ago
• bytedance / apm
  ☆53Updated 6 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 4 months ago
• peizhenbai / MapDiff
  Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch
  ☆40Updated 5 months ago
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆29Updated 4 months ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆58Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• HannesStark / CodonMPNN
  ☆29Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆53Updated this week