PKUliujl / GeoSeqBuilderView external linksLinks
☆32Feb 5, 2025Updated last year
Alternatives and similar repositories for GeoSeqBuilder
Users that are interested in GeoSeqBuilder are comparing it to the libraries listed below
Sorting:
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆72Jul 2, 2025Updated 7 months ago
- ☆23Nov 6, 2024Updated last year
- ☆12Nov 16, 2023Updated 2 years ago
- ☆17Dec 23, 2024Updated last year
- ☆10May 22, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆225Aug 7, 2025Updated 6 months ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆106Nov 18, 2025Updated 2 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 3 months ago
- ☆12Mar 28, 2025Updated 10 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆118Oct 16, 2025Updated 4 months ago
- Making Protein Language Modeling Accessible to All Biologists☆148Feb 9, 2026Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- ☆35Mar 30, 2025Updated 10 months ago
- ☆31Dec 12, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆117Oct 24, 2025Updated 3 months ago
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- ☆61Apr 9, 2024Updated last year
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆46Aug 5, 2025Updated 6 months ago
- ☆128Feb 9, 2026Updated last week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Oct 24, 2025Updated 3 months ago
- Learning the language of protein-protein interactions☆131Jan 12, 2026Updated last month
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Aug 5, 2025Updated 6 months ago
- ☆116Dec 7, 2022Updated 3 years ago
- ☆118Jan 3, 2026Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Nov 19, 2025Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆117Aug 3, 2025Updated 6 months ago
- ☆15Mar 28, 2025Updated 10 months ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆19May 15, 2025Updated 9 months ago
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Dec 1, 2025Updated 2 months ago
- ☆134Jun 3, 2025Updated 8 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated 11 months ago
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 4 months ago