Predict AMPs in (meta)genomes and peptides
☆89Nov 24, 2025Updated 3 months ago
Alternatives and similar repositories for macrel
Users that are interested in macrel are comparing it to the libraries listed below
Sorting:
- Attentive deep learning model for antimicrobial peptide prediction☆55Mar 22, 2025Updated 11 months ago
- ☆30Jan 21, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- ☆15Jun 24, 2024Updated last year
- ☆20Mar 29, 2022Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆170Dec 11, 2025Updated 2 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆96Aug 11, 2025Updated 6 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Aug 26, 2024Updated last year
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- BGC Detection and Classification Using Deep Learning☆156Nov 11, 2023Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated 11 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated last month
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆186Feb 24, 2026Updated last week
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 2 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 5 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Feb 20, 2026Updated last week
- ☆50Jan 4, 2026Updated last month
- ☆82Nov 27, 2025Updated 3 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Organism-specific interpretation of AMR genotypes☆15Mar 13, 2024Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆173Updated this week
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year