BigDataBiology / macrelLinks
Predict AMPs in (meta)genomes and peptides
☆81Updated 3 weeks ago
Alternatives and similar repositories for macrel
Users that are interested in macrel are comparing it to the libraries listed below
Sorting:
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- Find clustered hits from a BLAST search☆119Updated 7 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 7 months ago
- Similarity networks of biosynthetic gene clusters☆119Updated last week
- Systematic search of all known anti-phage systems.☆109Updated last month
- Phage Annotation using Protein Structures☆109Updated 2 weeks ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆141Updated last week
- sensitive and precise assembly of short sequencing reads☆157Updated 9 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆102Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 7 months ago
- viralVerify: viral contig verification tool☆71Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- ☆130Updated 10 months ago
- Detection of phage RBPs based on protein domains and machine learning☆24Updated 5 months ago
- ☆39Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆111Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated 3 weeks ago