Legana / ampirLinks
antimicrobial peptide prediction in R
☆33Updated 11 months ago
Alternatives and similar repositories for ampir
Users that are interested in ampir are comparing it to the libraries listed below
Sorting:
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 8 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- ☆18Updated 5 years ago
- ☆31Updated 4 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- metabolic heatmap☆21Updated 6 years ago
- ☆29Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated this week
- ☆24Updated 7 months ago
- 16S pipeline using qiime2 created with snakemake☆12Updated 2 weeks ago
- Software for predicting translation initiation rates in bacteria☆30Updated 4 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆54Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last month
- MicrobeRX☆14Updated 4 months ago
- ☆10Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Open source short linear motif discovery and sequence analysis☆25Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆59Updated 8 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year