Legana / ampirLinks
antimicrobial peptide prediction in R
☆33Updated last year
Alternatives and similar repositories for ampir
Users that are interested in ampir are comparing it to the libraries listed below
Sorting:
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- ☆18Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- MicrobeRX☆14Updated 5 months ago
- ☆31Updated 4 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 5 years ago
- Software for predicting translation initiation rates in bacteria☆30Updated 6 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- ☆24Updated 9 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 5 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆55Updated 10 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 4 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆22Updated last week
- ☆16Updated 2 years ago
- Protein Sequence Annotation with Language Models☆27Updated last week
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Updated last year
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- metabolic heatmap☆22Updated 6 years ago
- ☆19Updated this week
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 3 years ago