Alternatives and similar repositories for ampir

Users that are interested in ampir are comparing it to the libraries listed below

• ibivu / PRALINE
  Next-generation PRALINE sequence alignment program.
  ☆10Updated 6 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 3 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated last month
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 6 months ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 3 months ago
• Adapsyn / prism-4-paper
  ☆20Updated 4 years ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆49Updated 3 months ago
• GRONINGEN-MICROBIOME-CENTRE / MicrobeRX
  MicrobeRX
  ☆11Updated 3 months ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆20Updated this week
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆24Updated 9 months ago
• Janaksunuwar / AMR_prediction
  A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …
  ☆12Updated 2 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated last month
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• IKIM-Essen / RiboSnake
  16S pipeline using qiime2 created with snakemake
  ☆11Updated 2 months ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆29Updated last year
• nf-core / metapep
  From metagenomes to epitopes and beyond
  ☆12Updated last month
• carnegie / PlantClusterFinder
  ☆17Updated last year
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆20Updated 6 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last month