Legana / ampirLinks
antimicrobial peptide prediction in R
☆33Updated 9 months ago
Alternatives and similar repositories for ampir
Users that are interested in ampir are comparing it to the libraries listed below
Sorting:
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆31Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Metagenome analysis using the Kraken software suite☆33Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆33Updated 2 years ago
- ☆18Updated 4 years ago
- MicrobeRX☆11Updated last month
- ☆24Updated 5 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated this week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Open source short linear motif discovery and sequence analysis☆25Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆28Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Software for predicting translation initiation rates in bacteria☆29Updated last month
- metabolic heatmap☆21Updated 6 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆52Updated 5 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 6 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago