Merck / deepbgcLinks
BGC Detection and Classification Using Deep Learning
☆153Updated last year
Alternatives and similar repositories for deepbgc
Users that are interested in deepbgc are comparing it to the libraries listed below
Sorting:
- snakemake pipeline for creating trees from sequence sets☆86Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- ☆28Updated last year
- UniProt Id Mapping through API☆35Updated 2 weeks ago
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- A brief, quick and dirty introduction to Sequence Similarity Networks☆25Updated 2 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆153Updated 10 months ago
- Logan Unitigs and Contigs☆171Updated 3 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆61Updated 5 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 2 weeks ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆201Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 weeks ago
- RNA secondary structure/sequence profiles for homology search and alignment☆114Updated 10 months ago
- ☆11Updated 9 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- antiSMASH☆223Updated last month
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 6 months ago
- Predict AMPs in (meta)genomes and peptides☆86Updated 3 months ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆15Updated 4 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated last month
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆10Updated this week
- ☆14Updated 9 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 2 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated 3 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago