Alternatives and similar repositories for deepbgc:

Users that are interested in deepbgc are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆70Updated last week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆108Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 11 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆32Updated 3 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆20Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆68Updated this week
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆97Updated 11 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆152Updated 3 months ago
• antismash / antismash
  antiSMASH
  ☆191Updated 2 weeks ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆30Updated last month
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆147Updated this week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆77Updated last month
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆102Updated 2 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆99Updated 4 months ago
• ntranoslab / esm-variants
  ☆69Updated last year
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆26Updated 2 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆131Updated last week
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆68Updated 2 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 4 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆111Updated 2 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆64Updated 3 years ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆228Updated last month
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆82Updated 11 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆67Updated this week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆108Updated 9 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆92Updated this week
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆126Updated this week
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 6 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated this week