Merck / deepbgcLinks
BGC Detection and Classification Using Deep Learning
☆153Updated last year
Alternatives and similar repositories for deepbgc
Users that are interested in deepbgc are comparing it to the libraries listed below
Sorting:
- snakemake pipeline for creating trees from sequence sets☆85Updated 3 months ago
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆22Updated 2 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆151Updated 9 months ago
- UniProt Id Mapping through API☆35Updated 11 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆76Updated last week
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- antiSMASH☆221Updated last week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆58Updated 4 years ago
- Logan Unitigs and Contigs☆167Updated this week
- ☆27Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆14Updated 3 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆113Updated 10 months ago
- Webserver and command line tool for annotating engineered plasmids☆130Updated 2 months ago
- Cython bindings and Python interface to HMMER3.☆148Updated 3 weeks ago
- Python package to study microbial communities using metabolic modeling.☆107Updated last week
- ☆11Updated 9 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 5 months ago
- a pipeline to build similarity maps of protein space☆37Updated 9 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆199Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆146Updated this week
- Predict AMPs in (meta)genomes and peptides☆86Updated 2 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 2 weeks ago
- Protein 3D structure prediction pipeline☆86Updated this week
- Software for predicting translation initiation rates in bacteria☆29Updated last month