bluenote-1577 / fairyView external linksLinks
alignment-free coverage calculation for metagenomic binning >100 times faster
☆48Mar 13, 2025Updated 11 months ago
Alternatives and similar repositories for fairy
Users that are interested in fairy are comparing it to the libraries listed below
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆154Jan 23, 2026Updated 3 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 weeks ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Updated this week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated last week
- ☆82Nov 27, 2025Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Apr 10, 2025Updated 10 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Jun 25, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- ☆17May 13, 2025Updated 9 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Mar 20, 2025Updated 10 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆85Feb 7, 2026Updated last week
- BEAV: Bacterial Element Annotation reVamped☆73Aug 21, 2025Updated 5 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆180Jan 28, 2026Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Mar 28, 2025Updated 10 months ago
- geNomad: Identification of mobile genetic elements☆289Nov 10, 2025Updated 3 months ago
- ☆25Jan 30, 2025Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆84Nov 13, 2025Updated 3 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Jan 19, 2026Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Nov 3, 2023Updated 2 years ago
- ☆14Jan 28, 2026Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 3 weeks ago
- ☆14Oct 14, 2023Updated 2 years ago
- ☆50Jan 24, 2026Updated 3 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆166Jan 2, 2026Updated last month