bluenote-1577 / fairyLinks
alignment-free coverage calculation for metagenomic binning >100 times faster
☆46Updated 3 months ago
Alternatives and similar repositories for fairy
Users that are interested in fairy are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆40Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ☆23Updated 4 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- Discover and annotate the virome☆43Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆22Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week
- MAG Circularization Method☆33Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Recombination-free trees☆58Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆36Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year