bluenote-1577 / fairy
alignment-free coverage calculation for metagenomic binning >100 times faster
☆38Updated this week
Related projects ⓘ
Alternatives and complementary repositories for fairy
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- Bacterial GWAS analysis☆32Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆31Updated last year
- IslandPath standalone software☆31Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Calculate assocations between genes and traits☆19Updated last month
- ☆23Updated 9 months ago
- Discover and annotate the virome☆31Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆24Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated 2 weeks ago
- ☆57Updated this week
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- ☆14Updated last week
- Recombination-free trees☆56Updated last year
- Gene-flank analysis tool☆26Updated 6 months ago