bluenote-1577 / fairy
alignment-free coverage calculation for metagenomic binning >100 times faster
☆40Updated 3 weeks ago
Alternatives and similar repositories for fairy:
Users that are interested in fairy are comparing it to the libraries listed below
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- Bacterial GWAS analysis☆39Updated this week
- MAGScoT - a MAG scoring and refinement tool☆34Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Prophage Activity Estimator☆26Updated 10 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Calculate assocations between genes and traits☆23Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last week
- Recombination-free trees☆57Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆39Updated 5 months ago
- ☆24Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- IslandPath standalone software☆31Updated last year