Alternatives and similar repositories for SmORFinder:

Users that are interested in SmORFinder are comparing it to the libraries listed below

• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated 11 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆38Updated last month
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 5 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆27Updated last month
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆34Updated last month
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆23Updated this week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 9 months ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆38Updated 2 years ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 4 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆30Updated last month
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆18Updated 2 months ago
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆40Updated last week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆81Updated 2 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆43Updated 2 months ago
• mgtools / MinPath
  MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…
  ☆20Updated 3 years ago
• EBI-Metagenomics / mettannotator
  ☆62Updated last month
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆53Updated 6 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆28Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆54Updated last month
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆18Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆52Updated last month
• czbiohub-sf / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆36Updated 4 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• biobakery / metawibele
  MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
  ☆21Updated 3 months ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 2 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆35Updated 4 months ago