A command line tool to identify and annotate small proteins in microbial sequencing datasets.
☆25Mar 25, 2023Updated 2 years ago
Alternatives and similar repositories for SmORFinder
Users that are interested in SmORFinder are comparing it to the libraries listed below
Sorting:
- ☆18Oct 4, 2023Updated 2 years ago
- Just another minhash implementation.☆12Updated this week
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated last month
- ☆30Mar 20, 2025Updated 11 months ago
- Predict AMPs in (meta)genomes and peptides☆89Nov 24, 2025Updated 3 months ago
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆13Feb 10, 2025Updated last year
- Predict plasmids from uncorrected long read data☆41Oct 31, 2025Updated 4 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated last year
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 7 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆13May 10, 2025Updated 9 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 2 years ago
- Find Unique genomic Regions☆32Updated this week
- ☆35Nov 5, 2025Updated 3 months ago
- ☆30Jan 21, 2024Updated 2 years ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- Attentive deep learning model for antimicrobial peptide prediction☆55Mar 22, 2025Updated 11 months ago
- ☆16Mar 3, 2023Updated 2 years ago
- ☆15Jul 14, 2025Updated 7 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Oct 30, 2023Updated 2 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- snapper☆13Jul 8, 2024Updated last year
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- ☆13Dec 26, 2025Updated 2 months ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago