A command line tool to identify and annotate small proteins in microbial sequencing datasets.
☆28Mar 25, 2023Updated 3 years ago
Alternatives and similar repositories for SmORFinder
Users that are interested in SmORFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Oct 4, 2023Updated 3 years ago
- ☆11Nov 30, 2025Updated 10 months ago
- ☆10Aug 4, 2024Updated 2 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jul 20, 2026Updated 3 months ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆45Aug 1, 2025Updated last year
- Predict AMPs in (meta)genomes and peptides☆98Jul 19, 2026Updated 3 months ago
- Antimicrobial Peptide Scanner Version 2. Open source GLPv3 release of code from 2018 paper "Deep learning improves antimicrobial peptide …☆13Sep 26, 2026Updated last month
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated last year
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆18Jul 13, 2026Updated 3 months ago
- Just another minhash implementation.☆13Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 7 months ago
- ☆15Jun 23, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆17Mar 3, 2023Updated 3 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆64Sep 28, 2026Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 11 months ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 6 years ago
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 3 months ago
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 8 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- ☆34Mar 20, 2025Updated last year
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆12Aug 29, 2023Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 3 months ago
- ☆22Sep 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and flexible ORF finder☆84Jan 17, 2022Updated 4 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆53Mar 22, 2024Updated 2 years ago
- ☆31Jan 21, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆340Oct 14, 2026Updated 2 weeks ago
- De novo genome assembly for long reads using an overlap graph☆26Updated this week
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆13Jul 13, 2026Updated 3 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago