A command line tool to identify and annotate small proteins in microbial sequencing datasets.
☆25Mar 25, 2023Updated 2 years ago
Alternatives and similar repositories for SmORFinder
Users that are interested in SmORFinder are comparing it to the libraries listed below
Sorting:
- ☆19Oct 4, 2023Updated 2 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated 2 months ago
- ☆32Mar 20, 2025Updated last year
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 3 weeks ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 2 years ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last week
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆13Feb 10, 2025Updated last year
- Predict AMPs in (meta)genomes and peptides☆90Nov 24, 2025Updated 3 months ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆30Jan 21, 2024Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 7 years ago
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated last year
- ☆15Jul 14, 2025Updated 8 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Updated this week
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆125Oct 30, 2023Updated 2 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆56Mar 22, 2025Updated 11 months ago
- Find Unique genomic Regions☆32Updated this week
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- ☆16Mar 3, 2023Updated 3 years ago
- 🌐 Unipept frontend for metaproteomics data analysis☆25Mar 13, 2026Updated last week
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- ☆20Sep 4, 2024Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 3 months ago
- Open source short linear motif discovery and sequence analysis☆26Sep 19, 2024Updated last year
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- ☆36Nov 5, 2025Updated 4 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- Fast and flexible ORF finder☆80Jan 17, 2022Updated 4 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆296Updated this week
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago