16S pipeline using qiime2 created with snakemake
☆12Jan 2, 2026Updated 2 months ago
Alternatives and similar repositories for RiboSnake
Users that are interested in RiboSnake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- ☆14Oct 29, 2024Updated last year
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Mar 29, 2025Updated 11 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- Repository for general metagenomics Nextflow pipeline☆24Mar 10, 2026Updated 2 weeks ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- ☆50Mar 18, 2026Updated last week
- ☆14Jul 26, 2024Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 weeks ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Feb 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- MOlecule fRagmenTAtion fRamework☆29Updated this week
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Mar 19, 2026Updated last week
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- ☆10Nov 24, 2025Updated 4 months ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)☆18Mar 1, 2026Updated 3 weeks ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆38Jan 29, 2026Updated last month
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Virtual screening and cheminformatics utilities☆14Jan 20, 2016Updated 10 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year