SushiLab / magpipeLinks
☆19Updated 3 years ago
Alternatives and similar repositories for magpipe
Users that are interested in magpipe are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 4 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- Python bindings for the TaxonKit library☆41Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 3 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆23Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆42Updated 6 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 4 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆16Updated 2 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated last week
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- ☆30Updated 5 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated 2 months ago
- metabolic heatmap☆20Updated 6 years ago
- ☆31Updated 3 years ago
- A package to annotate protein sequences☆58Updated 4 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago