SushiLab / magpipeLinks
☆19Updated 3 years ago
Alternatives and similar repositories for magpipe
Users that are interested in magpipe are comparing it to the libraries listed below
Sorting:
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- A package to annotate protein sequences☆59Updated 4 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 7 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- PaperBLAST: find papers about a protein or its homologs☆40Updated last week
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last week
- ☆30Updated 6 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- ☆31Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆48Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 4 months ago