SushiLab / magpipeLinks
☆19Updated 3 years ago
Alternatives and similar repositories for magpipe
Users that are interested in magpipe are comparing it to the libraries listed below
Sorting:
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated last week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 4 months ago
- Viral protein family functional prediction using protein language models☆20Updated last year
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 5 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆45Updated this week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- Find clustered hits from a BLAST search☆120Updated 8 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆34Updated 2 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 4 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- Predict AMPs in (meta)genomes and peptides☆87Updated 2 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 6 months ago
- ☆30Updated 8 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆18Updated last week