Kalan-Lab / lsaBGC-PanLinks
lsaBGC - suite for pan-BGC-omics analysis
☆19Updated this week
Alternatives and similar repositories for lsaBGC-Pan
Users that are interested in lsaBGC-Pan are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆25Updated 2 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- ☆21Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ☆23Updated 4 months ago
- ☆26Updated 2 years ago
- ☆16Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 9 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆32Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago