Kalan-Lab / lsaBGC-Pan
lsaBGC - suite for pan-BGC-omics analysis
☆18Updated 4 months ago
Alternatives and similar repositories for lsaBGC-Pan:
Users that are interested in lsaBGC-Pan are comparing it to the libraries listed below
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆17Updated 11 months ago
- ☆18Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- ☆16Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 5 months ago
- ☆25Updated last year
- Prophage Activity Estimator☆26Updated 7 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆30Updated 4 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆16Updated this week
- MAG Circularization Method☆33Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆12Updated 3 years ago
- Bacterial GWAS analysis☆34Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated last year
- Prediction of microbial interactions in complex communities☆12Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month