katholt / AMRrulesLinks
Organism-specific interpretation of AMR genotypes
☆13Updated last year
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below
Sorting:
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Interpretative standards for AMR genotypes☆21Updated 2 weeks ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 4 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 4 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆19Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- ☆17Updated last year
- ☆20Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated last month
- ☆10Updated 2 months ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- ☆7Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆11Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆11Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Plasmid and antimicrobial resistance pipeline☆16Updated 5 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- ☆16Updated this week