katholt / AMRrulesLinks
Organism-specific interpretation of AMR genotypes
☆15Updated last year
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆17Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Interpretative standards for AMR genotypes☆27Updated this week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago
- ☆10Updated 9 months ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Updated 6 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆34Updated 3 weeks ago
- ☆25Updated this week
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 5 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Plasmid and antimicrobial resistance pipeline☆16Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated last month
- Intra-species bacterial contamination detection☆25Updated this week
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago