annejong / BAGEL4Links
☆15Updated last year
Alternatives and similar repositories for BAGEL4
Users that are interested in BAGEL4 are comparing it to the libraries listed below
Sorting:
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- ☆52Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆27Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆60Updated 3 years ago
- Prediction of prophages from bacterial genomes☆78Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- ☆29Updated 5 months ago
- ☆47Updated 4 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆72Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- ☆55Updated last year
- Phage prediction tools☆15Updated last year
- ☆56Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆25Updated 6 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- ☆44Updated 3 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆60Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago