annejong / BAGEL4Links
☆15Updated last year
Alternatives and similar repositories for BAGEL4
Users that are interested in BAGEL4 are comparing it to the libraries listed below
Sorting:
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆24Updated 6 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- ☆32Updated 3 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- ☆27Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- ☆50Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Phage prediction tools☆15Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Local version of the virus identification and analysis web server (tool set)☆59Updated last month
- ☆53Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- ☆54Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 7 months ago
- KEGG Module Evaluation Tool☆29Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆63Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 3 weeks ago