☆19Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for BAGEL4
Users that are interested in BAGEL4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 3 years ago
- ☆32Mar 20, 2025Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predict AMPs in (meta)genomes and peptides☆90Nov 24, 2025Updated 5 months ago
- snapper☆13Jul 8, 2024Updated last year
- MicrobeRX☆17Aug 11, 2025Updated 8 months ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated 11 months ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- ☆20Mar 29, 2022Updated 4 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆62Apr 23, 2026Updated last week
- ☆16Mar 3, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17May 13, 2025Updated 11 months ago
- ☆27Jan 30, 2025Updated last year
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- ☆89Oct 6, 2022Updated 3 years ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆107Updated this week
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 months ago
- ☆12Sep 11, 2025Updated 7 months ago
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆15Feb 10, 2025Updated last year
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆40Apr 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Oct 30, 2018Updated 7 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- gutSMASH☆59Oct 3, 2025Updated 7 months ago
- BGC Detection and Classification Using Deep Learning☆158Nov 11, 2023Updated 2 years ago