☆21Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for BAGEL4
Users that are interested in BAGEL4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆26Mar 25, 2023Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆44Aug 1, 2025Updated last year
- A pipeline for nanopore long-read metagenomic analysis.☆61Nov 26, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Jul 3, 2022Updated 4 years ago
- Predict AMPs in (meta)genomes and peptides☆96Jul 19, 2026Updated 3 weeks ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 5 months ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆41Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 5 months ago
- MicrobeRX☆17Aug 11, 2025Updated last year
- ☆32Mar 20, 2025Updated last year
- Attentive deep learning model for antimicrobial peptide prediction☆65Jun 2, 2026Updated 2 months ago
- ☆20Mar 29, 2022Updated 4 years ago
- antiSMASH☆261Jul 30, 2026Updated 2 weeks ago
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆17Jul 13, 2026Updated last month
- Find Unique genomic Regions☆34Jun 25, 2026Updated last month
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆15May 10, 2025Updated last year
- ☆18Jun 5, 2026Updated 2 months ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- ☆29Aug 2, 2026Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- ☆88Oct 6, 2022Updated 3 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- An updated pipeline for pangenome investigation☆369Jul 2, 2026Updated last month
- LLMs for high-throughput mining and generation of antimicrobial peptides☆27Oct 10, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆29Jun 1, 2017Updated 9 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 3 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- ☆17Mar 3, 2023Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated last month
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago