liaoherui / StrainScanLinks
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
☆43Updated last year
Alternatives and similar repositories for StrainScan
Users that are interested in StrainScan are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆32Updated 3 months ago
- Discover and annotate the virome☆58Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ☆34Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last month
- Prophage Activity Estimator☆31Updated last year
- ☆25Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- ☆38Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 months ago
- ☆42Updated 4 years ago