lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
☆41Sep 28, 2025Updated 7 months ago
Alternatives and similar repositories for lsaBGC
Users that are interested in lsaBGC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 9 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆168Apr 1, 2026Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Find clustered hits from a BLAST search☆142Jan 16, 2026Updated 4 months ago
- antiSMASH☆255Mar 24, 2026Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆41Feb 27, 2024Updated 2 years ago
- ☆32Jan 27, 2026Updated 3 months ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated 2 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BGC Detection and Classification Using Deep Learning☆158Nov 11, 2023Updated 2 years ago
- ☆21Apr 20, 2026Updated last month
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Nov 9, 2022Updated 3 years ago
- Systematic search of all known anti-phage systems.☆168May 5, 2026Updated 2 weeks ago
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 3 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 2 months ago
- PaperBLAST: find papers about a protein or its homologs☆52Apr 10, 2026Updated last month
- ☆52Mar 29, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 3 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Apr 9, 2026Updated last month
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆31Oct 26, 2021Updated 4 years ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated 2 weeks ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year