Kalan-Lab / lsaBGCLinks
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
☆39Updated 2 months ago
Alternatives and similar repositories for lsaBGC
Users that are interested in lsaBGC are comparing it to the libraries listed below
Sorting:
- A workflow and scripts for large-scale antiSMASH analyses☆47Updated 8 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆50Updated 11 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆37Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- ☆22Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆42Updated 2 years ago
- Prophage Activity Estimator☆28Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆42Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- ☆32Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 7 months ago
- Unified Human Gut Virome Catalog☆38Updated 3 weeks ago
- ☆45Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆61Updated this week
- ☆16Updated 6 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆38Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- ☆33Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16Updated 2 years ago
- ☆41Updated 5 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 3 weeks ago