tlawrence3 / amPEPpyLinks
☆24Updated last year
Alternatives and similar repositories for amPEPpy
Users that are interested in amPEPpy are comparing it to the libraries listed below
Sorting:
- Attentive deep learning model for antimicrobial peptide prediction☆48Updated 3 months ago
- ☆11Updated 6 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- DeepECtransformer☆24Updated last year
- Protein Sequence Annotation with Language Models☆21Updated 3 weeks ago
- Software for predicting translation initiation rates in bacteria☆26Updated 7 months ago
- antimicrobial peptide prediction in R☆31Updated 6 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆39Updated last week
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated this week
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 5 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆25Updated last month
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆54Updated 2 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Fast protein domain structure embedding+search tool☆21Updated last month
- UniProt Id Mapping through API☆34Updated 8 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated last month