☆30Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for amPEPpy
Users that are interested in amPEPpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Attentive deep learning model for antimicrobial peptide prediction☆57Mar 17, 2026Updated 3 weeks ago
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 3 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆88Aug 2, 2024Updated last year
- ☆15Jun 24, 2024Updated last year
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequences☆17Dec 7, 2022Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆67Apr 2, 2025Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 3 years ago
- ☆16Jun 18, 2020Updated 5 years ago
- ☆15Jul 14, 2025Updated 8 months ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆13Jul 16, 2022Updated 3 years ago
- Collects software dedicated to predicting specific properties of peptides☆68Dec 17, 2024Updated last year
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Jun 12, 2023Updated 2 years ago
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆117Sep 4, 2025Updated 7 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆28Jul 7, 2023Updated 2 years ago
- Interactive Python notebooks for PDBe API training☆59Feb 11, 2026Updated 2 months ago
- machine learning, molecular descriptor☆120Apr 10, 2023Updated 3 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆89Oct 6, 2022Updated 3 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- cuNumeric.jl wraps the cuPyNumeric C++ API providing a simple array programming interface that executes code on distributed clusters.☆19Updated this week
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Updated this week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- ☆14Nov 20, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Feb 2, 2026Updated 2 months ago
- Scaling and Load Balancing Shiny for R and Python Apps with Docker☆13Jun 1, 2024Updated last year
- a simple variational auto encoder with some exploration☆12Nov 22, 2024Updated last year
- Similarity networks of biosynthetic gene clusters☆165Apr 1, 2026Updated last week
- FAST: Fast Analysis of Sequences Toolbox☆31Oct 18, 2019Updated 6 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Nov 3, 2022Updated 3 years ago