Alternatives and similar repositories for amPEPpy

Users that are interested in amPEPpy are comparing it to the libraries listed below

• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆50Updated 7 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• Merck / bgc-pipeline
  ☆12Updated 10 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆155Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated last month
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆87Updated 2 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated 2 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated last week
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆22Updated 7 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆57Updated 7 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 4 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 8 months ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆21Updated last month
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated last week
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆15Updated 2 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 3 weeks ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated 10 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 5 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 6 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated this week
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆72Updated this week
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆110Updated 5 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• BigDataBiology / macrel
  Predict AMPs in (meta)genomes and peptides
  ☆87Updated 4 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 7 months ago