Alternatives and similar repositories for amPEPpy

Users that are interested in amPEPpy are comparing it to the libraries listed below

• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆52Updated 5 months ago
• Merck / bgc-pipeline
  ☆11Updated 8 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆152Updated last year
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated 8 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated last week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆86Updated 2 weeks ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆57Updated 4 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 10 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated 3 weeks ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated 2 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆69Updated last week
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆83Updated 3 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆21Updated 5 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 2 months ago
• BigDataBiology / macrel
  Predict AMPs in (meta)genomes and peptides
  ☆87Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆91Updated 6 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆56Updated 5 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated 3 months ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆14Updated this week
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 3 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆24Updated 2 years ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆24Updated 2 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆19Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month