Alternatives and similar repositories for amPEPpy

Users that are interested in amPEPpy are comparing it to the libraries listed below

• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆49Updated 3 months ago
• Merck / bgc-pipeline
  ☆11Updated 7 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆146Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆88Updated 5 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated 3 weeks ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆31Updated 7 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆57Updated 4 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated last month
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 3 weeks ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 9 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆63Updated last week
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆33Updated 9 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated last month
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆82Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 6 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆82Updated 2 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆135Updated 7 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆27Updated 7 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆82Updated 7 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated 2 months ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆20Updated this week