bcgsc / AMPlify
Attentive deep learning model for antimicrobial peptide prediction
☆46Updated last month
Alternatives and similar repositories for AMPlify
Users that are interested in AMPlify are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- ☆14Updated 10 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 8 months ago
- Software for predicting translation initiation rates in bacteria☆22Updated 5 months ago
- Viral protein family functional prediction using protein language models☆19Updated 11 months ago
- ☆83Updated 2 years ago
- ☆11Updated 5 months ago
- UniProt Id Mapping through API☆31Updated 7 months ago
- snakemake pipeline for creating trees from sequence sets☆76Updated 2 weeks ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 2 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆46Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 3 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆25Updated 2 months ago
- Genomic language model predicts protein co-regulation and function☆77Updated last month
- ☆7Updated 7 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 4 months ago
- Protein structure alignment and search algorithm☆59Updated this week
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆14Updated 2 months ago
- ☆11Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆104Updated 8 months ago
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- A collection of tools to download and process KEGG database☆36Updated 6 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 5 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- Feature map and function annotation of Proteins☆33Updated 11 months ago