bcgsc / AMPlifyLinks
Attentive deep learning model for antimicrobial peptide prediction
☆54Updated 8 months ago
Alternatives and similar repositories for AMPlify
Users that are interested in AMPlify are comparing it to the libraries listed below
Sorting:
- ☆29Updated last year
- Software for predicting translation initiation rates in bacteria☆30Updated 4 months ago
- UniProt Id Mapping through API☆36Updated 2 months ago
- ☆15Updated last year
- Protein structure alignment and search algorithm☆76Updated this week
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- antimicrobial peptide prediction in R☆33Updated 11 months ago
- Discovery of conserved gene clusters in multiple genomes☆118Updated 6 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 7 months ago
- ☆12Updated 11 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 2 months ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆14Updated 2 months ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆21Updated last month
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆16Updated last week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆62Updated 5 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆59Updated 8 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆89Updated 3 months ago
- ☆11Updated 8 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆36Updated this week
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆13Updated 6 months ago
- Multi-class signal peptide prediction and structure decoding model.☆98Updated 10 months ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Updated 4 months ago
- MicrobeRX☆14Updated 3 months ago
- snakemake pipeline for creating trees from sequence sets☆93Updated last month
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- A brief, quick and dirty introduction to Sequence Similarity Networks☆31Updated 2 years ago
- We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…☆32Updated last month
- Prediction of virus-host association using protein language models and multiple instance learning☆20Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago