Alternatives and similar repositories for AMPlify

Users that are interested in AMPlify are comparing it to the libraries listed below

• joy50706 / iAMPCN
  ☆15Updated last year
• tlawrence3 / amPEPpy
  ☆30Updated 2 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆36Updated 4 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆31Updated 6 months ago
• PeterDeWeirdt / defense_predictor
  Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
  ☆14Updated last month
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 8 months ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆25Updated 3 weeks ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆67Updated 10 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆125Updated 3 weeks ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆95Updated 5 months ago
• SizheQiu / Seq2Topt
  A predictor of enzyme optimal temperature
  ☆11Updated 10 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆16Updated last month
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated last year
• zjlab-BioGene / AMP-SEMiner
  Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…
  ☆13Updated 8 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆30Updated 9 months ago
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆85Updated 2 weeks ago
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆21Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆27Updated 2 weeks ago
• Hocnonsense / vcontact2
  ☆17Updated 2 years ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆53Updated 2 years ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆41Updated 6 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆65Updated 5 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 4 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 10 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆39Updated last year
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated last month
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆21Updated last month