joy50706 / iAMPCN

Related projects ⓘ

Alternatives and complementary repositories for iAMPCN

• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆41Updated last month
• tlawrence3 / amPEPpy
  ☆21Updated 10 months ago
• Adapsyn / prism-4-paper
  ☆20Updated 3 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 5 months ago
• Merck / bgc-pipeline
  ☆10Updated 3 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆22Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆18Updated 8 months ago
• alvesrco / pipecov
  This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …
  ☆14Updated last year
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆25Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆21Updated 7 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆27Updated last year
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆12Updated 5 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆32Updated 2 months ago
• cansyl / ECPred
  ☆15Updated 2 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆29Updated 2 weeks ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆20Updated 4 years ago
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 4 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 5 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆21Updated last year
• aziele / pfam_scan
  A tool for scanning FASTA protein sequences against a library of Pfam HMMs
  ☆10Updated 2 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated last month
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆34Updated 4 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆52Updated 4 years ago
• wt1005203 / mNODE
  ☆12Updated last year
• NicolaDM / phastSim
  fast sequence evolution simulation for SARS-CoV-2 and similar
  ☆17Updated 3 months ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆12Updated 3 years ago
• Tropini-lab / PUPpy
  Pipeline to design taxon-specific primes in defined bacterial communities.
  ☆14Updated last month