yhg926 / TQSLEView external linksLinks
TQSLE v1.0 released
☆10Aug 29, 2023Updated 2 years ago
Alternatives and similar repositories for TQSLE
Users that are interested in TQSLE are comparing it to the libraries listed below
Sorting:
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated this week
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆10Sep 1, 2020Updated 5 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- ☆11Nov 7, 2022Updated 3 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Jun 9, 2022Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 3 months ago
- ☆16Mar 17, 2023Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 3 months ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆15Aug 14, 2022Updated 3 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- ☆24Dec 3, 2025Updated 2 months ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 8 months ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 7 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 weeks ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19May 17, 2023Updated 2 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- ☆18Oct 22, 2024Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- ☆20Oct 26, 2023Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 3 months ago
- Python library to identify Identical By State regions☆22Mar 19, 2023Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 4 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 4 months ago
- Support scripts for the visualisation of pangenome analyses in Graphia☆21Oct 7, 2024Updated last year
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- K-mer substring space decomposition☆44Sep 1, 2025Updated 5 months ago
- Structural Variant Identification Method using Genome Assemblies☆134Sep 16, 2022Updated 3 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆28Sep 13, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 weeks ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 4 months ago