ComparativeGenomicsToolkit / taffyLinks
This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
☆29Updated 2 months ago
Alternatives and similar repositories for taffy
Users that are interested in taffy are comparing it to the libraries listed below
Sorting:
- Linear-time de novo Long Read Assembler☆41Updated 3 weeks ago
- ☆18Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated 3 weeks ago
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- ☆29Updated 2 years ago
- convert PAF format to CHAIN format☆33Updated 6 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated this week
- Kmer Analysis of Pileups for Genotyping☆33Updated this week
- ☆45Updated this week
- ☆21Updated 8 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- ☆38Updated last month
- Differential k-mer analysis☆37Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Convert HAL to VG☆22Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆32Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago