This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
☆31Mar 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for taffy
Users that are interested in taffy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Genome browser hub for the T2T genomes and resources☆27Updated this week
- ☆11Feb 20, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- Hierarchical Alignment Format☆181Apr 2, 2026Updated last week
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆33Apr 1, 2026Updated last week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆239Feb 10, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- ☆38Oct 6, 2025Updated 6 months ago
- implicit pangenome graph☆98Updated this week
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last week
- ☆152Nov 5, 2025Updated 5 months ago
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 2, 2026Updated last week
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- ☆18Jan 29, 2025Updated last year
- WinPCA. A package for windowed principal component analysis.☆48Apr 2, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- PGR-TK: Pangenome Research Tool Kit☆22Apr 1, 2026Updated last week
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Pairwise whole genome aligner☆233Mar 2, 2026Updated last month
- A multiscale pangenome browser☆29Updated this week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 2 weeks ago