Alternatives and similar repositories for taffy:

Users that are interested in taffy are comparing it to the libraries listed below

• mrvollger / NucFreq
  ☆35Updated 11 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 4 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 6 months ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 10 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated 3 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 2 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated this week
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated 2 weeks ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆25Updated 3 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• at-cg / RAFT
  ☆22Updated 6 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆22Updated last month
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆33Updated 3 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆38Updated 2 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated 2 weeks ago