CAncer Standards Long-read Evaluation
☆62Jul 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for castle
Users that are interested in castle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 30, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆85Updated this week
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆315Mar 5, 2026Updated 5 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last week
- A complete diploid human genome☆156Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A tool for somatic structural variant calling using long reads☆177Jun 8, 2026Updated 2 months ago
- ☆30Mar 1, 2026Updated 5 months ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- Open Human Genome Library☆67Dec 22, 2025Updated 7 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated 2 years ago
- General purpose utility related to GAF files☆33Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆93Jul 29, 2026Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆46Updated this week
- ☆23May 10, 2026Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated last month
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 months ago
- ☆42Oct 6, 2025Updated 10 months ago
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 4 months ago
- SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/…☆16Mar 31, 2025Updated last year
- Structural variant toolkit for VCFs☆421May 22, 2026Updated 2 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated last week
- ☆13May 27, 2025Updated last year
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- Creating alignment plots from bam files☆132Jul 28, 2026Updated 2 weeks ago
- ☆18Jul 21, 2026Updated 3 weeks ago