CAncer Standards Long-read Evaluation
☆61Nov 7, 2025Updated 7 months ago
Alternatives and similar repositories for castle
Users that are interested in castle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 30, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- General purpose utility related to GAF files☆29May 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13May 27, 2025Updated last year
- ☆42Oct 6, 2025Updated 8 months ago
- A complete diploid human genome☆152Jun 23, 2026Updated last week
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆24Nov 19, 2025Updated 7 months ago
- ☆30Mar 1, 2026Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆173Jun 8, 2026Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated 2 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Jun 25, 2026Updated last week
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Application of pan-genome for population☆121Oct 26, 2025Updated 8 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 4 months ago
- ☆23Updated this week
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Updated this week
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆23Jul 29, 2025Updated 11 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆41Jun 15, 2026Updated 2 weeks ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆80Jun 18, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- ☆39Feb 22, 2023Updated 3 years ago
- Centromere mapping and annotation pipeline☆27Updated this week
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆33Feb 5, 2026Updated 4 months ago
- Genome browser hub for the T2T genomes and resources☆28Apr 7, 2026Updated 2 months ago