CAncer Standards Long-read Evaluation
☆68Oct 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for castle
Users that are interested in castle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 30, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆91Oct 15, 2026Updated 2 weeks ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆327Mar 5, 2026Updated 7 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 4 months ago
- A complete diploid human genome☆162Oct 19, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 10 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆97Aug 2, 2026Updated 2 months ago
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated 4 months ago
- ☆32Mar 1, 2026Updated 7 months ago
- A tool for somatic structural variant calling using long reads☆181Jun 8, 2026Updated 4 months ago
- A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.☆13Oct 10, 2026Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆37Oct 27, 2025Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆98Sep 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- somatic SV calling on matched tumor-normal co-assembly graphs☆24Aug 1, 2024Updated 2 years ago
- Tools for plotting methylation data in various ways☆200Oct 10, 2026Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- ☆134Updated this week
- Open Human Genome Library☆71Dec 22, 2025Updated 10 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆13Oct 23, 2026Updated last week
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆20Oct 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 3 weeks ago
- Graph Variant Benchmarking for the HPRC2☆11May 26, 2026Updated 5 months ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- Genotyping of STRs with long reads☆12Updated this week
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆17May 14, 2026Updated 5 months ago
- A long-read somatic phasing software for tumor-only sequencing☆17Oct 23, 2026Updated last week
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆70May 26, 2026Updated 5 months ago
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated 4 months ago
- ☆26May 10, 2026Updated 5 months ago
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆30Oct 22, 2026Updated last week
- ☆10Nov 20, 2025Updated 11 months ago