Alternatives and similar repositories for HybridExpress

Users that are interested in HybridExpress are comparing it to the libraries listed below

• pan-sol / pan-sol-pipelines
  ☆10Updated last year
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 4 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆29Updated 5 months ago
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 4 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆36Updated 2 months ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• ERGA-consortium / pipelines
  ☆17Updated 5 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 5 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆14Updated last year
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆15Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆27Updated 3 months ago
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated 2 months ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆17Updated last year
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 7 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆18Updated 4 months ago
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 6 months ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Updated 7 years ago
• Markusjsommer / TD2
  TD2
  ☆27Updated 2 weeks ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated last year
• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated last year
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago