Alternatives and similar repositories for HybridExpress

Users that are interested in HybridExpress are comparing it to the libraries listed below

• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆27Updated 4 months ago
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 2 months ago
• gtrichard / mummer-ggplot
  Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
  ☆11Updated 4 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆17Updated last year
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆25Updated 2 months ago
• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated last year
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated last year
• ERGA-consortium / pipelines
  ☆17Updated 4 months ago
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated last month
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Updated 7 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆33Updated 3 weeks ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆15Updated last year
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆23Updated this week
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆30Updated last month
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆18Updated 3 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 5 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆25Updated last year
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for T2T assembly, and it is under development.
  ☆15Updated last month