GTPB / CPANG22Links
Computational Pangenomics
☆17Updated 3 years ago
Alternatives and similar repositories for CPANG22
Users that are interested in CPANG22 are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- ☆20Updated this week
- ☆26Updated 11 months ago
- ☆27Updated 2 years ago
- FastK based version of Merqury☆27Updated 2 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆37Updated last year
- Statistics and analysis for variation graphs☆45Updated 7 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 2 months ago
- ☆17Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Genome Assembly 102☆15Updated 3 months ago
- Differential k-mer analysis☆36Updated last year
- ☆21Updated last week
- TD2☆14Updated last month
- ☆36Updated 2 weeks ago
- Consensus genome annotation using OMA☆26Updated last month
- Kmer Analysis of Pileups for Genotyping☆32Updated last month