Alternatives and similar repositories for CPANG22:

Users that are interested in CPANG22 are comparing it to the libraries listed below

• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 4 months ago
• at-cg / RAFT
  ☆22Updated 6 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆18Updated 6 months ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 10 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last week
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• mrvollger / NucFreq
  ☆35Updated 11 months ago
• davidebolo1993 / cosigt
  ☆15Updated 2 weeks ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆24Updated 10 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆37Updated 2 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• SandraLouise / SVJedi-graph
  SV genotyper for long reads with a variation graph
  ☆12Updated last year
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 9 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• agshumate / LiftoffTools
  ☆25Updated last year